Uhm... there is a difference! I think it's probably easier to treat the polycystic ovaries than to treat the total syndrome.
Some of the symptoms of the actual syndrome are:
Male patterned baldness
Excess hair growth on the face faces, necks, chests, abdomens, and thighs, in women
Acne
Weight gain in upper body, abdomen
High blood pressure
Irregular or absent menstrual periods
Cysts on Ovaries
Infertility or decreased fertility in women
High blood sugar
With just the polycystic ovaries, I believe that Clomid is often a miracle drug. Basically, if they didn't explain why you would have the ovarian cyst, your ovaries start to form follicles each month and the most mature follicle(s) release an egg for ovulation. Polycystic ovaries are formed when those follicles never mature enough to release the egg and the cysts don't dissipate on their own. With Clomid, your body is tricked into thinking it is low on estrogen and goes into overtime making FSH and LH. Those hormones stimulate the ovaries to develop and MATURE the more follicles of better quality. This often causes the ovaries actually release an egg or eggs and the ones released will be more mature and higher quality. The more eggs you release, the higher the chance of conception.
I know that some people have had to go as far as ovarian drilling to assist in egg release... which is where they (in blatant, un-sugar coated terms) poke holes in the ovaries to allow for egg release. I haven't looked into it much, because it always sounds painful. I'm sure it's not as bad as it sounds though. There are videos of it on youtube if you're brave. I truly believe this is something that happens when all other options are tried and failed though.
I don't think you have much to worry about. When do you start discussing treatment?