I'm thinking about this too, lets see:
Shakespearean:
Miranda
Desdemona
Juliet
Ophelia
Beatrice
Rosalind
Portia
Others:
Wendy (Peter Pan)
Alice (Wonderland)
Jane (Eyre)
Anne (Green Gables)
Pippi (Longstocking)
Moll (Flanders)
Sarah (A Little Princess)
Charlotte (Web)
Clarissa (Samuel Richardson)
Tess (D'Urbervilles)
Lyra (Golden Compass)
Hermione (Harry Potter)
Dorothy (Oz)
Bella (Twilight...sorry!)
I have also heard of literary names being used unconventionally, - Darcy for a girl after 'Mr Darcy' and apparently Heath Ledger was named after 'Heathcliff'.
Worst girls literary name ever? Veruca Salt! (Chocolate Factory)